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yycD [2018-05-24 11:56:43]
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yycD [2018-05-24 11:56:43]

general stress protein, survival of ethanol stress
locus
BSU40450
pI
4.78
mw
7.33 kDa
protein length
66 aa Sequence Blast
gene length
198 bp Sequence Blast
function
survival of ethanol stress
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]

    • Gene

    Coordinates
    4,159,005 → 4,159,205

    The protein

    Structure

  • [PDB|2ZF3] (31% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • expression during spore [SW|germination] is strongly reduced under conditions of osmotic stress [Pubmed|27766092]
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    Biological materials

    Mutant

  • MGNA-B830 (yycD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1829 NBRP B. subtilis, Japan]
  • BKE40450 (Δ[gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTCATTCCTCCCTTA, downstream forward: _UP4_TAATGAATGAAAGCCTTCGC
  • BKK40450 (Δ[gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTCATTCCTCCCTTA, downstream forward: _UP4_TAATGAATGAAAGCCTTCGC

    • References

  • 12823818,15805528,27766092